tardis - Temporal Archive Remote Distribution and Installation System for Galaxy-in-Docker Usage: tardis backup - Back up PostgreSQL database and galaxy-central/config. tardis transmit - Transmit datasets and backup to Amazon-S3-compatible storage. tardis cron [hour24UTC] - Run backup and transmit daily at hour24 UTC. tardis restore_datasets - Retrieve datasets from S3 (not desirable when using object store). tardis retrieve_config - Retrieve database and config backup (but not datasets) from S3. tardis apply_config [date] - Restore config from backup, whether from S3 or "tardis backup". tardis seed_database [date] - Replace PostgreSQL database with copy from backup. tardis purge_empty_tmp_dirs - Purge empty tmp directories that accumulate with datasets. tardis upgrade_database - Upgrade the PostgreSQL database to match the Galaxy version. tardis bash - Enter a bash shell. tardis upgrade_conda {url_or_path} {md5sum} - Upgrade conda (both arguments required) where: date - can be relative (e.g., "1 hour ago") or absolute (e.g., any format accepted by the Linux `date` program, see e.g. https://linux.die.net/man/1/date) hour24UTC - any two digit hour for backup to occur; must be UTC (GMT), not local time. url_or_path - any URL from https://repo.continuum.io/miniconda/, or path (e.g., if you copied the miniconda installer to your export directory) md5sum - MD5 digest for url_or_path, e.g., from https://repo.continuum.io/miniconda/
--help Show this help text --datasets Restore ALL dataset file (not necessary when using Galaxy object store) --retrieve_config Retrieve config data --apply_config ['date'] Apply retrieved config data as of specified date --database ['date'] Restore PostgreSQL database (lose database changes since specified backup) 'date' can be used to specify the newest backup can be applied, i.e., exclude backups newer than the date 'date' can be any format accepted by the Linux 'date' program (https://linux.die.net/man/1/date), which may be relative (e.g., '3 days ago') or RFC822 (e.g., '28 Apr 2019 05:20:23 -5') [where '-5' means five hours behind UTC] or pseudo ISO8601 ('2019-04-28 05:20:23 -05:00') [where '-05:00' means five hours behind UTC]. It is quite flexible, so go ahead and try something that makes sense to you. --db_upgrade Upgrade PostgreSQL to match installed Galaxy version --Miniconda3 Upgrade /export/_conda to the latest Miniconda3 version. This requires that Lynx be installed. --Miniconda2 Upgrade /export/_conda to the latest Miniconda2 version. Upgrading to Miniconda2 will pointless once Galaxy has sunseted Python 2 unless you are installing an old version of Galaxy that used Miniconda2 and you want to maintain the Miniconda version. This also requires that Lynx be installed.